Contributions and suggestions are welcome at [email protected].
RESEARCH
The research behind living soil
A growing database of soil food web science — Dr. Elaine Ingham’s publications, research from the wider field, and, as our open-research program matures, studies from the Foundation and its partners.
Publications
Dr. Elaine’s publications
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Journal article
Ingham, E.R. and D.A. Klein · Appl. Environ. Microbiol., 44:363-370
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Journal article
The effect of chloroform on protozoa and other soil inhabitants
McClellan, J.F., D.C. Coleman, K.A. Horton and E.R. Ingham · J. Protozool., 29:491
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Journal article
Ames, R.N., E.R. Ingham and C.P.P. Reid · Can. J. Microbiol., 28:351-355
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Journal article
Ames, R.N., E.R. Ingham and C.P.P. Reid · Phytopathology, 72(7):950
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Journal article
Ingham, E.R. and D.C. Coleman · Microbial Ecology, 10:345-358
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Journal article
Ingham, E.R. and D.A. Klein · Plant and Soil, 81:61-68
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Journal article
Ames, R.N., C.P.P. Reid and E.R. Ingham · New Phytol., 96:555-563
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Journal article
Soil fungi: Measurement of hyphal length
Ingham, E.R. and D.A. Klein · Soil Biol. Biochem., 16:279-280
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Journal article
Soil fungi: Relationships between hyphal activity and staining with fluorescein diacetate
Ingham, E.R. and D.A. Klein · Soil Biol. Biochem., 16:273-278
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Journal article
Filter-out grazers (FOG): A filtration experiment for separating protozoan grazers in soil
Frey, J.S., J.F. McClellan, E.R. Ingham and D.C. Coleman · Biol. Fert. Soils, 1:73-79
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Journal article
Ingham, R.E., J.A. Trofymow, E.R. Ingham and D.C. Coleman · Ecological Monographs, 55:119-140
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Journal article
Ingham, E.R., D.A. Klein and M.J. Trlica · Plant and Soil, 85:65-76
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Journal article
Review of the effects of twelve selected biocides on target and non-target soil organisms
Ingham, E.R. · Crop Protection, 4:3-32
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Journal article
Ingham, E.R., C. Cambardella and D.C. Coleman · Can. J. Soil Sci., 66:261-272
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Journal article
Ingham, E.R., J.A. Trofymow, R.N. Ames, H.W. Hunt, C.R. Morley, J.C. Moore and D.C. Coleman · J. Applied Ecology, 23:597-614
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Journal article
Ingham, E.R., J.A. Trofymow, R.N. Ames, H.W. Hunt, C.R. Morley, J.C. Moore and D.C. Coleman · J. Applied Ecology, 23:615-630
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Journal article
Bacterial, fungal and protozoan responses to chloroform fumigation in stored prairie soil
Ingham, E.R. and K.A. Horton · Soil Biol. Biochem., 19:545-550
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Journal article
Moore, J.C., E.R. Ingham and D.C. Coleman · Biol. Fert. Soils, 5:6-12
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Journal article
The detrital food web in a short grass prairie
Hunt, H.W., D.C. Coleman, E.R. Ingham, R.E. Ingham, E.T. Elliott, J.C. Moore, C.P.P. Reid and C.R. Morley · Biol. Fert. Soils, 3:57-68
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Journal article
Carbon, nitrogen, phosphorus and sulfur cycling in terrestrial ecosystems
Coleman, D.C. and E.R. Ingham · Biogeochemistry, 5:3-6
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Journal article
Early patterns of heterotroph activity in conifer logs
Carpenter, S.E., M.E. Harmon, E.R. Ingham, R.G. Kelsey, J.D. Lattin and T.D. Schowalter · Proc. Roy. Soc. Edinburgh, 94B:33-43
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Journal article
Interactions between soil animals and ectomycorrhizal fungal mats
Cromack, K., Jr., B.L. Fichter, A.M. Moldenke, J.A. Entry and E.R. Ingham · Agric. Ecosyst. Environ., 24:161-168
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Journal article
Hunt, H.W., E.R. Ingham, D.C. Coleman, E.T. Elliott and C.P.P. Reid · Ecology, 69:1009-1016
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Peer-reviewed technical report
Report on the selection of several potentially critical terrestrial systems
Wilson, M.V., E.R. Ingham, C.D. McIntire and M.L. Scott · USEPA
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Technical report
Social and economic concerns with respect to the choice of critical terrestrial ecosystems
Ingham, E.R., M.V. Wilson and C.D. McIntire · USEPA
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Peer-reviewed technical report
A general model of biotic interactions
Ingham, E.R., M.V. Wilson and C.D. McIntire · Special Report to the USEPA, CR-813570-01-0, 36 pp.
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Journal article
Ingham, E.R., D.C. Coleman and J.C. Moore · Biol. Fertil. Soils, 8:29-37
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Journal article
Seasonal and faunal effects on decomposition in semiarid prairie, meadow and lodgepole pine forest
Coleman, D.C., E.R. Ingham, H.W. Hunt, E.T. Elliott, C.P.P. Reid and J.C. Moore · Pedobiologia, 34:207-219
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Journal article
Use of staining and inhibitors to separate fungal and bacterial activity in soil
Stamatiadis, S., J.W. Doran and E.R. Ingham · Soil Biol. Biochem., 22:81-88
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Journal article
A comparison of agar film techniques for estimating fungal biovolumes in litter and soil
Lodge, D.J. and E.R. Ingham · Agric. Ecosyst. Environ., 34:131-144
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Peer-reviewed technical report
Ingham, E.R., W.G. Thies, D.L. Luoma, A.R. Moldenke and M.A. Castellano · Report
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Journal article
Ingham, E.R., R. Griffiths, K. Cromack and J.A. Entry · Soil Biol. Biochem., 23:465-471
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Book chapter
Interactions among mycorrhizal fungi, rhizosphere organisms, and plants
Ingham, E.R. and R. Molina · Pages 169-197 in Barbosa, P., V.A. Krischik and C.G. Jones (eds), Microbial Mediation of Plant-Herbivore Interactions. John Wiley and Sons, NY
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Journal article
Microbial characteristics of ectomycorrhizal mat communities in Oregon and California
Griffiths, R.P., E.R. Ingham, B.A. Caldwell, M.A. Castellano and K. Cromack, Jr. · Biology and Fertility of Soils, 11:196-202
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Journal article
Ingham, E.R., D.C. Coleman, R. Parmelee and D.A. Crossley · Pedobiologia, 35:297-304
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Book chapter
Decomposition of fallen trees: Effects of initial conditions and heterotroph colonization rates
Schowalter, T.D., B.A. Caldwell, S.E. Carpenter, R.P. Griffiths, M.E. Harmon, E.R. Ingham, R.G. Kelsey, J.D. Lattin and A.R. Moldenke · Pages 373-383 in K.P. Singh and J.S. Singh (eds), Tropical Ecosystems: Ecology and Management. Wiley Eastern, New Delhi
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Peer-reviewed technical report
Evaluation of terrestrial indicators for use in ecological assessments at hazardous waste sites
Linder, G., E.R. Ingham, C.J. Brandt and G. Henderson · USEPA/600/R-92/183
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Magazine article
Ingham, E.R. · Soil Ecology Society Newsletter, 5:2-9
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Journal article
The sustainable biosphere initiative: A commentary from the U.S. Soil Ecology Society
Klopatek, C.C., E.G. O'Neill, D.W. Freckman, C.D. Bledsoe, D.A. Coleman, D.A. Crossley, Jr., E.R. Ingham, D. Parkinson and J.M. Klopatek · Bulletin of the Ecological Society of America, 73:223-228
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Peer-reviewed technical report
Use of soil foodweb structure and function to assess superfund sites
Ingham, E.R. · USEPA Ecological Site Assessment Program, Corvallis Environmental Research Lab
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Journal article
Population responses of target and non-target forest-soil organisms to selected biocides
Colinas, C., E. Ingham and R. Molina · Soil Biol. Biochem., 26:41-47
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Journal article
Protozoan communities around conifer roots colonized by ectomycorrhizal fungi
Ingham, E.R. and H. Massicotte · Mycorrhiza, 5:53-61
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Magazine article
Soil organisms and forest health
Ingham, E.R. · Headwaters Journal, Spring:12-15
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Book chapter
Ingham, E.R. · In Methods of Soil Analysis, Part 2: Microbiological and Biochemical Properties, P. Bottomley (ed). Soil Science Society of America
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Peer-reviewed technical report
Standard Operating Procedure for Total Bacteria
Ingham, E.R. · USEPA Global Climate Change Program, Corvallis Environmental Research Lab
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Journal article
Coleman, D.C., D.A. Crossley, Jr. and E.R. Ingham · J. Sustain. Agric., 4(3):7-30
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Journal article
Ingham, E.R., J.D. Doyle and C.W. Hendricks · Applied Soil Ecology, 2:263-274
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Technical report
Ingham, E.R. · Edmonds Institute, Edmonds, WA
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Technical report
Biosafety regulations: A critique of existing documents
Ingham, E.R. and M. Holmes · The Edmonds Institute, Edmonds, WA
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Book chapter
Microflora and microfauna on stems and trunks: Diversity, food webs and effects on plants
Ingham, E.R. and A. Moldenke · Pages 241-256 in Gartner, B.L. (ed), Plant Stems: Physiology and Functional Morphology. Academic Press, San Diego
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Peer-reviewed technical report
Standard Operating Procedure for Microbial Population Dynamics
Ingham, E.R. · USEPA Global Climate Change Program, Corvallis Environmental Research Lab
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Peer-reviewed technical report
Standard Operating Procedure for Nematode Population and Community Structure
Ingham, E.R. · USEPA Global Climate Change Program, Corvallis Environmental Research Lab
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Peer-reviewed technical report
Standard Operating Procedure for Protozoan Populations and Community Structure
Ingham, E.R. · USEPA Global Climate Change Program, Corvallis Environmental Research Lab
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Conference proceedings
Foundations of bio-diversity in managed Douglas-fir forests
Carey, A.B., D.R. Thysell, L.J. Villa, T.M. Wilson, S.M. Wilson, J.M. Trappe, W. Colgan, E.R. Ingham and M. Holmes · In: Peterson, D.L. and C.V. Klimas (eds), The role of restoration in the ecosystem. Proceedings of the 2nd Symposium for Ecological Restoration. Madison, WI: Society for Ecological Restoration, 68-82
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Journal article
Ingham, E.R. and W.G. Thies · Applied Soil Ecol., 3:35-47
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Journal article
Ingham, E.R. and W. Thies · Can. J. For. Res., 27:724-731
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Journal article
Griffiths, R.P., J.A. Entry, E.R. Ingham and W.H. Emmingham · Plant and Soil, 190:169-178
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Journal article
Sances, F.V. and E.R. Ingham · Compost Science and Utilization, 5:23-37
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Conference proceedings
Ingham, E.R. · Proceedings of the IUFRO Interdisciplinary Uneven-aged Management Symposium
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Book chapter
Ingham, E.R. · In Sylvia, D. and P. Hartel (eds), Soil Microbiology: Environmental and Agricultural Perspectives. Oxford University Press
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Journal article
Massicotte, H.B., L.E. Tackaberry, E.R. Ingham and W.G. Thies · Appl. Soil Ecol., 10:117-126
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Journal article
Foodweb methodology to assess ecological effects of anthropogenic stressors in soil
Hendricks, C.W., M.T. Holmes and E.R. Ingham · Trends in Soil Science, 2:181-189
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Magazine article
Soil organisms and their role in healthy turf
Ingham, E.R. · Turf Grass Trends, 7:1-6
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Magazine article
Soil view: Anaerobic bacteria and compost tea
Ingham, E.R. · BioCycle, 39(6):86
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Journal article
Sustainable agriculture and the ecology of soil
Ingham, E.R. and J. Barlow · Perspectives on Business and Global Change, 12:31-42
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Magazine article
Ingham, E. · BioCycle, 40:74-75
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Journal article
Dynamics of soil fungal and bacterial biomass in a temperate climate alley cropping system
Seiter, S., E.R. Ingham and R.D. William · Appl. Soil Ecol., 12(2):139-147
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Journal article
Effects of Klebsiella planticola SDF20 on soil biota and wheat growth in sandy soil
Holmes, M.T., E.R. Ingham, J.D. Doyle and C.W. Hendricks · Appl. Soil Ecol., 11:67-78
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Book chapter
Rygiewicz, P.T. and E.R. Ingham · Environmental Geology, 564-568
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Book
Ingham, E.R. and M. Alms · Self-published
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Journal article
The mycorrhizal colonization of six wetland plant species at sites differing in land use history
Ingham, E.R. and M.V. Wilson · Mycorrhiza, 9(4):233-235
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USDA
Ingham, E.R. · NRCS Soil Quality Institute, USDA
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Magazine article
Ingham, E.R. · Kitchen Gardener, 29:16-19
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Book
The Compost Tea Brewing Manual
Ingham, E.R. · Sustainable Studies Institute, Eugene, OR. 60 pp.
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Conference proceedings
The functional roles of forest soil arthropods: The soil is a lively place
Moldenke, A., M. Pajutee and E. Ingham · Proceedings of the California Forest Soils Council Conference on Forest Soils Biology and Forest Management. USDA Forest Service, Pacific Southwest Research Station, Gen. Tech. Rep. PSW-GTR-178, pages 7-22
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Magazine article
Micronized compost and microbial life in compost
Ingham, E.R. · BioCycle, 42(7):58
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Journal article
Peachey, R.E., A. Moldenke, R.D. William, R. Berry, E. Ingham and E. Groth · Applied Soil Ecology, 21(1):59-70
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Book chapter
Linder, G., G. Henderson and E. Ingham · Handbook of Ecotoxicology, 191-214
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Journal article
Effects of compost amended container media on ornamental plant growth
Highland, M.T.F., D.C. Sclar, E.R. Ingham, K.L. Gartley and J.E. Swasey · HortScience, 39(4):750C-750
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Book chapter
The soil foodweb: Its role in ecosystem health
Ingham, E.R. · The Overstory Book: Cultivating Connections with Trees, 62
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Conference proceedings
The soil foodweb: soil and composts as living ecosystems
Ingham, E.R. and M.D. Slaughter · First International Conference Soil and Compost Eco-Biology, León, Spain
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Journal article
Comparison of soil biota between organic and conventional agroecosystems in Oregon, USA
Ingham, E.R. · Pedosphere, 15(3):395-403
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Journal article
A comparison of soil food webs beneath C3- and C4-dominated grasslands
Dornbush, M., C. Cambardella, E. Ingham and J. Raich · Biology and Fertility of Soils, 45(1):73-81
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Journal article
Rygiewicz, P.T., V.J. Monleon, E.R. Ingham, K.J. Martin and M.G. Johnson · Applied Soil Ecology, 45(1):26-38
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Journal article
Tunick, M.H., M. Paul, E.R. Ingham, H.J. Karreman and D.L. Van Hekken · International Journal of Dairy Technology, 68(4):511-518
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Journal article
Case study: Comparison of milk composition from adjacent organic and conventional farms in the USA
Tunick, M.H., D.L. Van Hekken, M. Paul, E.R. Ingham and H.J. Karreman · International Journal of Dairy Technology, 69(1):137-142
Other relevant publications
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Journal article
Wood, R.K.S. · Annals of Applied Biology, 38(1):203-216
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Journal article
Litter decomposition under snow cover in a balsam fir forest
Taylor, B.R. and H.G. Jones · Canadian Journal of Botany, 68(1):112-120
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Journal article
Biological nitrogen fixation for sustainable agriculture: A perspective
Bohlool, B.B., J.K. Ladha, D.P. Garrity and T. George · Plant and Soil, 141(1-2):1-11
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Journal article
Compost and compost water extract-induced systemic acquired resistance in cucumber and Arabidopsis
Zhang, W., D.Y. Han, W.A. Dick, K.R. Davis and H.A.J. Hoitink · Phytopathology, 88(5):450-455
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Journal article
Wardle, D.A., H.A. Verhoef and M. Clarholm · Global Change Biology, 4(7):713-727
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Journal article
El-Masry, M.H., A.I. Khalil, M.S. Hassouna and H.A.H. Ibrahim · World Journal of Microbiology and Biotechnology, 18:551-558
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Journal article
Top-down is bottom-up: Does predation in the rhizosphere regulate aboveground dynamics?
Moore, J.C., K. McCann, H. Setälä and P.C. de Ruiter · Ecology, 84(4):846-857
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Journal article
Scheuerell, S.J. and W.F. Mahaffee · Phytopathology, 94(11):1156-1163
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Journal article
Schmidt, S.K. and D.A. Lipson · Plant and Soil, 259(1-2):1-7
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Journal article
Zaller, J.G. · Biological Agriculture & Horticulture, 24(2):165-180
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Journal article
In vitro and in vivo evaluation of individually compost fungi for potato fusarium dry rot biocontrol
Daami-Remadi, M., H. Jabnoun-Khiareddine, F. Ayed, K. Hibar, I.E.A. Znaidi and M. El Mahjoub · Journal of Biological Sciences, 6(3):572-580
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Journal article
Al-Mughrabi, K.I. · Australian Journal of Basic and Applied Sciences, 1(4):785-792
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Journal article
Al-Mughrabi, K.I., C. Berthélémé, T. Livingston, A. Burgoyne, R. Poirier and A. Vikram · Journal of Plant Sciences, 3:168-175
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Journal article
Eckardt, N.A. · The Plant Cell, 20:241-243
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Journal article
Kerkeni, A., M. Daami-Remadi, N. Tarchoun and M.B. Khedher · Asian Journal of Plant Pathology, 2(1):15-23
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Journal article
In vitro studies on control of soil-borne plant pathogens by earthworm Eudrilus eugeniae exudates
Shobha, S.V. and R.D. Kale · Journal citation not verified
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Journal article
Larkin, R.P. · Soil Biology and Biochemistry, 40(6):1341-1351
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Journal article
Siddiqui, Y., S. Meon, R. Ismail and M. Rahmani · Biological Control, 49:38-44
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Journal article
Control of powdery mildew (Erysiphe polygoni) in tomato by foliar applications of compost tea
Segarra, G., M. Reis, E. Casanova and M.I. Trillas · Journal of Plant Pathology, 91:683-689
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Journal article
Gea, F.J., M.J. Navarro and J.C. Tello · Journal of Plant Diseases and Protection, 116:271-273
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Journal article
Pant, A.P., T.J.K. Radovich, N.V. Hue, S.T. Talcott and K.A. Krenek · Journal of the Science of Food and Agriculture, 89(14):2383-2392
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Journal article
Sang, M.K., J.G. Kim and K.D. Kim · Phytopathology, 100:774-783
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Magazine article
Evidence for nitrogen-fixation in the Salicaceae family
von Wuehlisch, G. · Tree Planters' Notes, 54(2):38-41
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Journal article
Xu, D., W. Raza, G. Yu, Q. Zhao, Q. Shen and Q. Huang · World Journal of Microbiology and Biotechnology, 28(3):1193-1201
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Journal article
Biochemical properties of compost tea associated with compost quality and effects on pak choi growth
Pant, A.P., T.J.K. Radovich, N.V. Hue and R.E. Paull · Scientia Horticulturae, 148:138-146
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Journal article
St. Martin, C.C.G. and R.A.I. Brathwaite · Biological Agriculture & Horticulture, 28(1):1-33
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Journal article
St. Martin, C.C.G., W. Dorinvil, R.A.I. Brathwaite and A. Ramsubhag · Biological Agriculture & Horticulture, 28(3):185-205
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Journal article
Humic-like substances from different compost extracts could significantly promote cucumber growth
Xu, D., Q. Wang, Y. Wu, G. Yu, Q. Shen and Q. Huang · Pedosphere, 22(6):815-824
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Journal article
Naidu, Y., S. Meon and Y. Siddiqui · BioControl, 57(6):827-836
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Journal article
Fritz, J.I., I.H. Franke-Whittle, S. Haindl, H. Insam and R. Braun · Canadian Journal of Microbiology, 58(7):836-847
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Journal article
Marín, F., M. Santos, F. Diánez, F. Carretero, F.J. Gea, J.A. Yau and M.J. Navarro · World Journal of Microbiology and Biotechnology, 29(8):1371-1382
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Journal article
Influence of the nitrogen form on in vitro organogenesis in Equisetum arvense
Nakatani, K. and Y. Fujii · Weed Biology and Management, 13(4):151-155
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Journal article
Chang, Z.Q., X.Q. Liu, Q. Feng, Z.X. Che, H.Y. Xi, Y.H. Su and J.H. Si · Journal of Arid Land, 5(4):488-499
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Journal article
Comparison of seasonal soil microbial process in snow-covered temperate ecosystems of Northern China
Zhang, X., W. Wang, W. Chen, N. Zhang and H. Zeng · PLoS ONE, 9(3):e92985
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Journal article
Seddigh, S., L. Kiani, B. Tafaghodinia and B. Hashemi · Archives of Phytopathology and Plant Protection, 47(6):658-664
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Journal article
Winter soil CO2 flux from different mid-latitude sites from Middle Taihang Mountain in North China
Shen, H., J. Cao, W. Zhang, X. Zeng and H. Wang · PLoS ONE, 9(3):e91589
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Journal article
Tollefson, S.J., G. Curlango-Rivera, D.A. Huskey, T. Pew, G. Giacomelli and M.C. Hawes · Plant and Soil, 389(1-2):145-156
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Journal article
Shadmani, L., S. Jamali and A. Fatemi · Mycologia Iranica, 5(1):7-14
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Journal article
Overview of engineering problems of soil compaction and their effects on growth and yields of crops
Odey, S. · Journal of Advances in Engineering and Technology, 5(9):701-709
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Journal article
Fungal-bacterial diversity and microbiome complexity predict ecosystem functioning
Wagg, C., K. Schlaeppi, S. Banerjee, E.E. Kuramae and M.G.A. van der Heijden · Nature Communications, 10:4841
Peer Reviewed Articles
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Internet article
Study finds fungi, not plant matter, responsible for most carbon sequestration in northern forests
March 19, 2013
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Internet article
Carbon sequestration: The climate change solution that virtually all climate activists ignore
February 3, 2015
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Internet article
Researchers propose ecological route to plant disease control
September 24, 2015
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Internet article
Compost could be worth double or triple of current price only if…
September 18, 2018
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Internet article
September 24, 2021
Work with us on research
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